Agricultural Genome to Phenome Initiative
Program Funding
Annual program obligations reported to SAM.gov.
Who has received this funding
Organizations awarded under CFDA 10.332 (USAspending.gov).
- Iowa State University Of Science And Technology 4 awards $3,976,834
- University Of California, Davis 2 awards $2,051,935
- Michigan State University $948,396
- The Regents Of The University Of California $930,000
- Texas A&M Agrilife Research $901,524
Funded Projects
Examples of what this program has supported.
Program Objective
The National Institute of Food and Agriculture’s Agricultural Genome to Phenome Initiative (AG2PI) program focuses on collaborative science engagement that brings together a community of researchers across both crops and animals to lay the foundation for expanding knowledge concerning genomes and phenomes of importance to the agriculture sector of the United States. Applications that propose a collaboration among U.S. crop and animal researchers are encouraged. In FY 2022, Congress recognized the value of leading public and Land-grant Universities with unique high-throughput phenotyping and greenhouse facilities and expertise for plant science innovation, root and rhizome innovation, and food for health. Congress provided funding for the Genome to Phenome program and encouraged NIFA to support the development of tools and datasets that can be used across multiple crop species to develop advanced genome engineering tools for integrated optimization of crop yield and animal feed for improved animal reproduction and nutrition and to mitigate environmental impacts from crop and animal production. Specifically the objectives of the program are-
(1) to expand knowledge concerning genomes and phenomes of crops and animals of importance to the agriculture sector of the United States;
(2) to understand how variable weather, environments, and production systems impact the growth and productivity of specific varieties of crops and species of animals in order to provide greater accuracy in predicting crop and animal performance under variable conditions;
(3) to support research that leverages plant and animal genomic information with phenotypic and environmental data through an interdisciplinary framework, leading to a novel understanding of plant and animal processes that affect growth, productivity, and the ability to predict performance, which will result in the deployment of superior varieties and species to producers and improved crop and animal management recommendations for farmers and ranchers;
(4) to catalyze and coordinate research that links genomics and predictive phenomics at different sites across the United States to achieve advances in crops and animals that generate societal benefits;
(5) to combine fields such as genetics, genomics, plant physiology, agronomy, climatology, and crop modeling with computation and informatics, statistics, and engineering;
(6) to combine fields such as genetics, genomics, animal physiology, meat science, animal nutrition, and veterinary science with computation and informatics, statistics, and engineering;
(7) to focus on crops and animals that will yield scientifically important results that will enhance the usefulness of many other crops and animals;
(8) to build on genomic research, such as the Plant Genome Research Project and the National Animal Genome Research Program, to understand gene function in production environments that is expected to have considerable returns for crops and animals of importance to the agriculture of the United States;
(9) to develop improved data analytics to enhance understanding of the biological function of genes;
(10) to allow resources developed under this section, including data, software, germplasm, and other biological materials, to be openly accessible to all persons, subject to any confidentiality requirements imposed by law; and
(11) to encourage international partnerships with each partner country responsible for financing its own research.
Eligibility
Eligible Applicants
- Nonprofit Organization
- Local
- U.S. State Government
Federal
Public nonprofit institution/organization (includes institutions of higher education and hospitals)
Individual/Family
U.S. Territories and possessions (includes institutions of higher education and hospitals)
Private nonprofit institution/organization (includes institutions of higher education and hospitals)
Small business (less than 500 employees)
Specialized group (e.g. health professionals, students, veterans)
Native American Organizations (includes lndian groups, cooperatives, corporations, partnerships, associations)
Other public institution/organization
Local (includes State-designated lndian Tribes, excludes institutions of higher education and hospitals
State (includes District of Columbia, public institutions of higher education and hospitals)
How to Apply
Award Procedure
Within the limit of funds authorized, the NIFA awarding official will make grants to responsible and eligible applicants whose applications are judged most meritorious under the procedures set forth in this NOFO
Decision Timeline
- Approval: From 120 to 180 days
Program details & compliance
Description
The purpose of the “Agricultural Genome to Phenome Initiative” is to (1) study agriculturally significant crops and animals in production environments to achieve sustainable and secure agricultural production; (2) ensure that current gaps in existing knowledge of agricultural crop and animal genetics and phenomics are filled; (3) identify and develop a functional understanding of relevant genes from animals and agronomically relevant genes from crops that are of importance to the agriculture sector of the United States; (4) ensure future genetic improvement of crops and animals of importance to the agriculture sector of the United States; (5) study the relevance of diverse germplasm as a source of unique genes that may be of importance in the future; (6) enhance genetics to reduce the economic impact of pathogens on crops and animals of importance to the agriculture sector of the United States; and (7) disseminate findings to relevant audiences.
Mission Categories
Primary: Agricultural Resource Conservation and Development
Other categories:
Research and Development
Use of Funds
Allowed Uses
Legislative mandated Indirect Cost (IDC)-Indirect Cost (IDC) not to exceed 30 percent of Total Federal Funds Awarded (TFFA) of the recipient. Section 1462(a) and (c) of the National Agricultural Research, Extension, and Teaching Policy Act of 1977 (NARETPA) limits IDC for the overall award to 30 percent of Total Federal Funds Awarded (TFFA) under a research, education, or extension grant. The maximum IDC rate allowed under the award is determined by calculating the amount of IDC using:
1. the sum of an institution’s negotiated indirect cost rate and the indirect cost rate charged by sub-awardees, if any; or
2. 30 percent of TFFA.
The maximum allowable IDC rate under the award, including the IDC charged by the sub-awardee(s), if any, is the lesser of the two rates.
If the result of number one is the lesser of the two rates, the grant recipient is allowed to charge the negotiated IDC rate on the prime award and the sub-award(s), if any. Any sub-awards would be subject to the sub-awardee’s negotiated IDC rate. The sub-awardee may charge its negotiated IDC rate on its portion of the award, provided the sum of the IDC rate charged under the award by the prime awardee and the sub-awardee(s) does not exceed 30 percent of the TFFA.
If the result of number two is the lesser of the two rates, then the maximum IDC rate allowed for the overall award, including any sub-award(s), is limited to 30 percent of the TFFA. That is, the IDC of the prime awardee plus the sum of the IDC charged by the sub-awardee(s), if any, may not exceed 30 percent of the TFFA.
In the event of an award, the prime awardee is responsible for ensuring the maximum indirect cost allowed for the award is not exceeded when combining IDC for the Federal portion (i.e., prime and sub-awardee(s)) and any applicable cost-sharing (see 7 CFR 3430.52(b)). Amounts exceeding the maximum allowable IDC are considered unallowable.
Restrictions
Successful applicants must not use grant funds awarded under the authority of this NOFO to renovate or refurbish research, education, or extension space; purchase or install fixed equipment in such space; or to plan, repair, rehabilitate, acquire, or construct buildings or facilities. Funds made available for grants under this subsection shall not be used for the construction of a new building or facility or the acquisition, expansion, remodeling, or alteration of an existing building or facility (including site grading and improvement, and architect fees).
Required Documentation
Applicants (unless excepted under 2 CFR § 25.110(b) or (c), or has an exception approved by the Federal awarding agency under 2 CFR § 25.110(d)) must (1): Have an active SAM registration prior to applying; (2) Provide a valid Unique Entity Identifier number in its application; and (3) Continue to maintain an active SAM registration with current information at all times during which it has an application under consideration or an active federal award. Applicants must furnish the information required in the Notice of Funding Opportunity (NOFO). Successful applicants recommended for funding must furnish the information and assurances requested during the award documentation process.
Matching Requirements
Specific details are provided in the Notice of Funding Opportunities (NOFOs)
Reporting & Compliance
Applicable 2 CFR 200 Subparts
- Subpart B — General Provisions
- Subpart C — Pre-Federal Award Requirements
- Subpart D — Post-Federal Award Requirements
- Subpart E — Cost Principles
- Subpart F — Audit Requirements